Welcome to ChassiDex


ChassiDex is a database of host organisms used in synthetic biology. Under each host organism, all the information a synthetic biologist would need to work with that organism is listed. We also work on software tools to make working with different hosts easier.

Scroll below to view our list of organisms


We have also made a tool for generating codon tables from genome data of any organism. Do check it out at cute.chassidex.org. However, please note that it is still in beta stage.


Also, check out our icon font for drawing synbio circuits with ease. comicsyns.chassidex.org

Host organisms

Acidithiobacillus ferrooxidans Acinetobacter baylyi Azotobacter vinelandii Bacillus subtilis Escherichia coli Lactococcus lactis Magnetospirillum magneticum Pichia pastoris Pseudomonas fluorescens Pseudomonas putida Saccharomyces cerevisiae Streptococcus thermophilus Vibrio harveyi Vibrio natriegens

Browse by tags

#acidophilic

Acidithiobacillus ferrooxidans

#aerobic

Acinetobacter baylyi Azotobacter vinelandii Pseudomonas fluorescens Pseudomonas putida

#chemolithoautotrophic

Acidithiobacillus ferrooxidans

#endosporulating

Bacillus subtilis

#eukaryotic

Pichia pastoris Saccharomyces cerevisiae

#facultative-anaerobic

Acidithiobacillus ferrooxidans Bacillus subtilis Escherichia coli Lactococcus lactis Magnetospirillum magneticum Pichia pastoris Saccharomyces cerevisiae Streptococcus thermophilus Vibrio harveyi Vibrio natriegens

#fungal

Pichia pastoris Saccharomyces cerevisiae

#gram-negative

Acidithiobacillus ferrooxidans Acinetobacter baylyi Azotobacter vinelandii Escherichia coli Magnetospirillum magneticum Pseudomonas fluorescens Pseudomonas putida Vibrio harveyi Vibrio natriegens

#gram-positive

Bacillus subtilis Lactococcus lactis Streptococcus thermophilus

#halophilic

Vibrio harveyi Vibrio natriegens

#lactose-fermenting

Lactococcus lactis Streptococcus thermophilus

#magnetotactic

Magnetospirillum magneticum

#metal-solubilizing

Acidithiobacillus ferrooxidans

#naturally-competent

Acinetobacter baylyi

#nitrogen-fixing

Azotobacter vinelandii

#probiotic

Streptococcus thermophilus

#prokaryotic

Acidithiobacillus ferrooxidans Acinetobacter baylyi Azotobacter vinelandii Bacillus subtilis Escherichia coli Lactococcus lactis Magnetospirillum magneticum Pseudomonas fluorescens Pseudomonas putida Streptococcus thermophilus Vibrio harveyi Vibrio natriegens

#yeast

Pichia pastoris Saccharomyces cerevisiae

We need data contributors

If you are working on a host organism that is not indexed here, you can help by contributing data. Please fill this form and we will get back to you.